Basic Information
VIS ID
TVIS30000751
Fusion event
HIV-SUPT20H integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
37597406/37023269 (Hg38)
End
37597406/37023269 (Hg38)
Orient
+
Location type
Intronic
Target gene
SUPT20H
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-2276/Upstream/12860765; hsa-mir-1267/Downstream/2640765;
Nearest TSS
ENST00000623511/Upstream/9363; ENST00000612438/Downstream/1678;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/22183, chr13-CpG: 52/Downstream/35989
Upstream sequence
TTTCAGAAAATTTATATATTTTTCTTTGTGCAAAACAAGAAGGCAGAAAAATTACACCTTTTGAGCTATCGAGATGAAGATGTTTATATCTAATGCGAAG
Downstream sequence
ACCACCCTATCACTGTGCAGTGTACTAAAACTTTCAGCATATATTAGCTATCTATAAAAAATCTAAAAAACTGGAATGACTTTTTTCCCCAAATTGGTAC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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