Basic Information
VIS ID
TVIS30000752
Fusion event
HIV-NAA16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
GRCh37/hg19
Start
41943025/41368889 (Hg38)
End
41943025/41368889 (Hg38)
Orient
-
Location type
Intronic
Target gene
NAA16
miRNAs that regulate target gene
hsa-mir-374b-5p ; hsa-mir-18a-3p ; hsa-mir-155-5p
Nearest miRNA
hsa-mir-2276/Upstream/267789; hsa-mir-1267/Downstream/199397;
Nearest TSS
ENST00000623511/Upstream/6434; ENST00000495148/Downstream/350;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/56829, chr13-CpG: 144/Downstream/87888
Upstream sequence
agaccataatataatttatgaaaaagtgaagtcattatatgcaacttaaagcaaaaggaaggtgaaagatttaaagctgatctaattaaaagtatacagg
Downstream sequence
aggatgtacataggttgtatggaaatactgtgtcattttatatcacaggcttgagtatcagtggactttgtgggggtgggggtcatgaaccaatccccca
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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