Basic Information
VIS ID
TVIS30000756
Fusion event
HIV-TRA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
22429657/21961429 (Hg38)
End
22429657/21961429 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRA
Nearest miRNA
hsa-mir-6717/Upstream/938043; hsa-mir-1185-1/Downstream/995521;
Nearest TSS
ENST00000550708/Upstream/11023; ENST00000390442/Downstream/4022;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/449872, chr14-CpG: 40/Downstream/627586
Nearby gene
OR4E2(+295419) ;
Upstream sequence
acatgaaagttcagactgaaatgttggtctttctttgaattaccacaaagaaaaaaccctaccattcccaatatagagatgttatatggtccctttcccc
Downstream sequence
cgggcataacccaaaatgcacaagttaatcaaatttgggatttattattaaacttgatttggataagcattgcatcactttggttaaactacgtgagcag
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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