Basic Information
VIS ID
TVIS30000763
Fusion event
HIV-TICRR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
90146253/89603022 (Hg38)
End
90146253/89603022 (Hg38)
Orient
+
Location type
Intronic
Target gene
TICRR
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-10393/Upstream/234916; hsa-mir-1302-10/Downstream/247615;
Nearest TSS
ENST00000557528/Upstream/20725; ENST00000561095/Downstream/22378;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/26890, chr15-CpG: 18/Downstream/25412
Upstream sequence
AGTAAATAAGAACAAAAAGGCAGTGTCCCTACTTTTAGGAAAATGAACTTTGGAGGATACAGaaataatattaaatatttttatGAATGTGTATAAAACT
Downstream sequence
ATAATCCAAGGAATAAAGAAATATAAACTTGTCAAGAGATTAACAATTTTACTCAAGAGTGTGATAGTTAGAGGTAATGTGAAGAAAAATGGCAAGTAAA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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