Basic Information
VIS ID
TVIS30000771
Fusion event
HIV-MVD integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
88728543/88662135 (Hg38)
End
88728543/88662135 (Hg38)
Orient
-
Location type
Intronic
Target gene
MVD
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-11401/Upstream/193104; hsa-mir-4722/Downstream/54143;
Nearest TSS
ENST00000527434/Upstream/1263; ENST00000569786/Downstream/894;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/2707, chr16-CpG: 121/Downstream/565
Upstream sequence
caaccgcactcctgggcatttatcccagaagaatggaaatgtatgttcacacaaaaacctgtatacaacattttatggcagctttattggtaagggaaac
Downstream sequence
acaaaaaaattagccagtcgtggtggcggcttctggaaagaaaagaaagaaagaaagaaaacgttagatgctctttgcggggtgaggccttggctagaga
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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