Basic Information
VIS ID
TVIS30000772
Fusion event
HIV-RNF166 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
88763696/88697288 (Hg38)
End
88763696/88697288 (Hg38)
Orient
+
Location type
UTR3
Target gene
RNF166
miRNAs that regulate target gene
hsa-mir-7977 ; hsa-mir-6820-5p ; hsa-mir-4660 ; hsa-mir-6736-3p
Nearest miRNA
hsa-mir-11401/Upstream/228257; hsa-mir-4722/Downstream/18990;
Nearest TSS
ENST00000527434/Upstream/787; ENST00000565071/Downstream/895;
Nearest CpG islands
chr16-CpG: 37/Target, None/Upstream, None/Downstream
Upstream sequence
GCCTGGGTTCCTCCCGGCTCGACTGCGGAGCGCGACTCGCGCGTCGGTCCCTTCTTCCCACGAGGGGGTATCATGGCTTTGAAGAGACGGCGGCAGCTCC
Downstream sequence
AGGTCCCAGCGTCCAGCCCTGCCCAAGTAGGCCGCCTGCTCGGCCAGAAGCACCGAAGAACCCAGCGACGCCGGTGGGACCAGGCGGCCCTGCTCTGGCG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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