VISDB Viral Integration Site DataBase

VIS ID

TVIS30000773

Fusion event

HIV-GID4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr17

Cytoband

p11.2

Reference genome

Start

End

17959982/18056668 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-421 ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-454-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-651-3p ; hsa-mir-1252-5p ; hsa-mir-548t-5p ; hsa-mir-4476 ; hsa-mir-4477b ; hsa-mir-4533 ; hsa-mir-6124 ; hsa-mir-548az-5p ; hsa-mir-6876-5p ; hsa-mir-7856-5p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-381-3p ; hsa-mir-92b-3p ; hsa-mir-300 ; hsa-mir-6513-3p ; hsa-mir-505-3p ; hsa-mir-5579-3p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-6854-3p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-873-5p ; hsa-mir-590-5p ; hsa-mir-3942-3p ; hsa-mir-5589-3p ; hsa-mir-6847-5p ; hsa-mir-4257 ; hsa-mir-6882-5p ; hsa-mir-3941 ; hsa-mir-564 ; hsa-mir-216b-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-182-5p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-183-5p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-3685 ; hsa-mir-155-3p ; hsa-mir-331-5p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-5681b ; hsa-mir-6505-3p ; hsa-mir-617 ; hsa-mir-4678 ; hsa-mir-634 ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa

Nearest miRNA

hsa-mir-1253/Upstream/242737; hsa-mir-10226/Downstream/284146;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/16487, chr17-CpG: 44/Downstream/31098

Upstream sequence

TCTATTTTCCATTTCATATTGGTCCTGCAAAAAGCAAAGTCTTTGAGGCCCAGTGACACTCAGTTTTAGGCTAGGTTGACTACAAATTAAATACTTGGAA

Downstream sequence

AGCAACTCTTAATTTTCCCATTGACTTCCGTTAGAACATTGGAAGATATCTGGATCTGCAGACTCTGCTAGACTGGACTGAAACATTTTGGGTGAGAGAG