Basic Information
VIS ID
TVIS30000783
Fusion event
HIV-C17orf99 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
76151787/78155706 (Hg38)
End
76151787/78155706 (Hg38)
Orient
-
Location type
Intronic
Target gene
C17orf99
miRNAs that regulate target gene
hsa-mir-129-5p ; hsa-mir-2113 ; hsa-mir-2278 ; hsa-mir-31-5p ; hsa-mir-335-5p ; hsa-mir-3688-5p ; hsa-mir-4474-3p ; hsa-mir-5010-3p ; hsa-mir-6809-5p ; hsa-mir-6832-3p ; hsa-mir-7108-5p ; hsa-mir-891a-3p
Nearest miRNA
hsa-mir-10226/Upstream/758652; hsa-mir-1250/Downstream/1551470;
Nearest TSS
ENST00000595228/Upstream/8852; ENST00000586029/Downstream/4358;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/14603, chr17-CpG: 80/Downstream/12608
Upstream sequence
gtgcccACCTGATACACACTAttctttttcttttttttgagacggagtcttgctctgtcacccatgctagagtacaatggcaggatattggctcactgta
Downstream sequence
acctctgtctcctgggttcaagtgattctctggcctcagtcttctgagtagctgggattacaggcatgtaccaccatgcccagataatttttgtattttt
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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