Basic Information
VIS ID
TVIS30000787
Fusion event
HIV-LPIN2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
GRCh37/hg19
Start
2966681/2966683 (Hg38)
End
2966681/2966683 (Hg38)
Orient
+
Location type
Intronic
Target gene
LPIN2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-769-5p
Nearest miRNA
hsa-mir-8078/Upstream/2854344; hsa-mir-1-2/Downstream/918670;
Nearest TSS
ENST00000575820/Upstream/18342; ENST00000582591/Downstream/335;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/53374, chr18-CpG: 105/Downstream/45866
Upstream sequence
TAAGTAAACATGATAAAAGCCTTCATGAAGCCTCCAGATTTCTTACTGCAAGTGGGCTGCTTTCAGCAATCTGAGTATCATTTTTACTTAATGCGACTTG
Downstream sequence
ACTACTTAAAGATGAAATGATTACAGGGAATCCAAAGAAGCCATACTTACCCTCCAAGTCTCCTCACACCACTACTATTAACCCTCCCGCTGGACCATGG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate