Basic Information
VIS ID
TVIS30000788
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr18
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
48476607/50950237 (Hg38)
End
48476607/50950237 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/823674; hsa-mir-122/Downstream/2286864;
Nearest TSS
ENST00000575820/Upstream/11120; ENST00000586966/Downstream/17754;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/70624, chr18-CpG: 62/Downstream/17669
Nearby gene
ME2(+445) ;
Upstream sequence
GGAACAAATTGGATTACTAGCAAGGGTAAGGTTTATTGACAATGAGAAGTTTTAGTCCAAGATTTTAGttaaaatattttaaaattttttGATTCATAAC
Downstream sequence
CAAGAAGTTGCCTCAGATCACTGTGAAGCTTTAAAATGCAGGTGCCTTTGCTCCTCCTCCCTCCAGGCCCCCGGGGGCAGAGCCCTGGCTGGTGTCTCTT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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