Basic Information
VIS ID
TVIS30000789
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
556003/556003 (Hg38)
End
556003/556003 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-1302-11/Upstream/483893; hsa-let-7e/Downstream/248937;
Nearest TSS
ENST00000633603/Upstream/11968; ENST00000590218/Downstream/15274;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/4461, chr19-CpG: 98/Downstream/16275
Nearby gene
GZMM(+6083) ;
Upstream sequence
gacaagagcaaaaaactccatctcaaaaaaacaaacaaaaaaaTGCTCAGAGGCAAGGGTTGAGCTTCCTCTCCAGCCTCCTCCAGAGGTCACAGGGCAC
Downstream sequence
CGCCCCACCCCACCCACCCCACCCACTGGGTCCTGGGGTGACTCCAACTGGACAGAGATCAGTGGAGGCCAGGCCAGGCTGGTGTTTGGTGAGCTGGAGC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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