Basic Information
VIS ID
TVIS30000792
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1405242/1405243 (Hg38)
End
1405242/1405243 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-1302-11/Upstream/591590; hsa-let-7e/Downstream/410916;
Nearest TSS
ENST00000633603/Upstream/3673; ENST00000590419/Downstream/2326;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3458, chr19-CpG: 194/Downstream/1867
Nearby gene
DAZAP1(+2326) ;
Upstream sequence
aaaaatatattatttGTAATCAGCTTGTGCCCGACTTCCTTCTTTGGGCCACATTCTGTGCATTTCATCCACCCACTGCTTCATTGTTCATTTATCCAGT
Downstream sequence
CACCAATAGATGGATGTGTGGTTATTTCAAATGTTCCAGTCTTGTTttgttttgtttttgatagaaacagggtcttgccatgttggccaggctggtctcg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate