Basic Information
VIS ID
TVIS30000795
Fusion event
HIV-PGLYRP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
p13.12
Reference genome
GRCh37/hg19
Start
15587939/15477128 (Hg38)
End
15587939/15477128 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
PGLYRP2
Nearest miRNA
hsa-mir-10395/Upstream/27520; hsa-let-7e/Downstream/2804949;
Nearest TSS
ENST00000633603/Upstream/12557; ENST00000601005/Downstream/2373;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5034, chr19-CpG: 28/Downstream/74174
Upstream sequence
GGAGAGATGGATGGTCTTTTGTGATGAATTGAAGTTAAAAATTGGGGATGTTAGAGGGAAAGGTATTTTGAAAGATGCCTGGgactggctgtggtggctt
Downstream sequence
aggcctgtaatcccagcactttcggaggccgaggtgagtggatcacctgagatcaggagttcaaggccagcctggccaacaccgtgaaaccccatctcta
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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