Basic Information
VIS ID
TVIS30000797
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
18692398/18581588 (Hg38)
End
18692398/18581588 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-10395/Upstream/194954; hsa-let-7e/Downstream/853475;
Nearest TSS
ENST00000633603/Upstream/8212; ENST00000597371/Downstream/7097;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/9364, chr19-CpG: 97/Downstream/7024
Nearby gene
UBA52(+4128) ;
Upstream sequence
ccctcacctgtttggccaagcattggcccaagatttaagtcacttcttgcacccaggtaccctaattcttcaatatatggatgacttacttctcccgttg
Downstream sequence
agagaccctgtgccatcaggctacccaagactttttttttttttttttttgagacggagtcttgcactgttgcccaggctggagtgcagtggcgcaatct
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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