Basic Information
VIS ID
TVIS30000800
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
44265291/43761139 (Hg38)
End
44265291/43761139 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/1409934; hsa-let-7e/Downstream/892547;
Nearest TSS
ENST00000633603/Upstream/6149; ENST00000591203/Downstream/7838;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5948, chr19-CpG: 52/Downstream/12982
Nearby gene
KCNN4(-5394) ;
Upstream sequence
ACAAAGATGTTATGGTATGAAGAGACTCCCACGTACCCATCGCCCAATATTGACAGACATCTGCATTTTTCTTGTCTTATGTCTTCTATTTTTCCCTCCC
Downstream sequence
ACATATAAGCATACTTCCCGCCACCCCCTGGAGTTTTGTTTGTTTTAAGAAAATCACAGATAACCTGTCATTTTGTTAATAACTATACAAGTATGCtaaa
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate