Basic Information
VIS ID
TVIS30000803
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
q13.42
Reference genome
GRCh37/hg19
Start
54086647/53583393 (Hg38)
End
54086647/53583393 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/1301500; hsa-mir-10394/Downstream/83286;
Nearest TSS
ENST00000633603/Upstream/27906; ENST00000376650/Downstream/48663;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/28393, chr19-CpG: 86/Downstream/64429
Nearby gene
ZNF331(+3124) ;
Upstream sequence
ggtgtggtggtgctcacttgtagtcccaactactcaagaggctgaggcaggaggattgcttgagcccaggaggtggaggctacagtgagtgatgattgca
Downstream sequence
tcactggattccagcctggataatgacaaaaaaacaaacaaaacaaacaaaaaCCCTACAAAGAGCAGTAACAACAACAACAAAAAAAAAACAgggcggg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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