Basic Information
VIS ID
TVIS30000809
Fusion event
HIV-ZGPAT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62357321/63725969 (Hg38)
End
62357321/63725969 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZGPAT
Nearest miRNA
hsa-mir-1-1/Upstream/439103; hsa-mir-1914/Downstream/193480;
Nearest TSS
ENST00000382410/Upstream/16880; ENST00000484569/Downstream/4408;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/17047, chr20-CpG: 22/Downstream/8928
Upstream sequence
ttgctgaggctggagtgcagtggcgcgatttcggctcactgcaacctccaccaccttcgaggttcaagcaattctcctgcctcagcctcctgagtagttg
Downstream sequence
ggactaccggagtgtgccaccaccatgcccagctaatttttgtatttatagtagagacgaggtttcaccatgttggcaaggctggtgttgaactccggac
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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