Basic Information
VIS ID
TVIS30000810
Fusion event
HIV-ZGPAT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62357327/63725975 (Hg38)
End
62357327/63725975 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZGPAT
Nearest miRNA
hsa-mir-1-1/Upstream/439109; hsa-mir-1914/Downstream/193474;
Nearest TSS
ENST00000382410/Upstream/16886; ENST00000484569/Downstream/4402;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/17053, chr20-CpG: 22/Downstream/8922
Upstream sequence
aggctggagtgcagtggcgcgatttcggctcactgcaacctccaccaccttcgaggttcaagcaattctcctgcctcagcctcctgagtagttgggacta
Downstream sequence
ccggagtgtgccaccaccatgcccagctaatttttgtatttatagtagagacgaggtttcaccatgttggcaaggctggtgttgaactccggacctcagg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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