Basic Information
VIS ID
TVIS30000812
Fusion event
HIV-chr21 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr21
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
14360140/12987819 (Hg38)
End
14360140/12987819 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10396a/Upstream/4000154; hsa-let-7c/Downstream/418565;
Nearest TSS
ENST00000624081/Upstream/2337984; ENST00000624445/Downstream/28873;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/2360095, chr21-CpG: 39/Downstream/621796
Upstream sequence
atgggcctcaaagtgttccaactgtccacttgcagattctgcaaaaagagagtttcaaaactgctcaatcaaaagaaaggtttacctctttgagatgagt
Downstream sequence
acacacataacaaagaagtttctcagattgcttctgtctagattttatgtgaagatatttccttttctactataggccacaaagtgctgaacatgtccac
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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