Basic Information
VIS ID
TVIS30000813
Fusion event
HIV-LOC105377134 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr21
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
15416941/14044620 (Hg38)
End
15416941/14044620 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377134
Nearest miRNA
hsa-mir-10396a/Upstream/320346; hsa-let-7c/Downstream/2494469;
Nearest TSS
ENST00000624081/Upstream/17169; ENST00000461088/Downstream/144483;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/16747, chr21-CpG: 67/Downstream/19178
Nearby gene
ANKRD20A11P(No orient, 64176)
Upstream sequence
acaaaaaattagctgggtggcacatgcctgtaattccagctactcggcaggctgaggcaggagaatcgcttgaacccgggaagtgaaggttgcagtgagc
Downstream sequence
caagatagtgccattgcactccagcttgggcaacaggagtgaaactctatctcaaaaaaaaggagctaactttaaatattaaaacagaaatgggttaaaa
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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