Basic Information
VIS ID
TVIS30000815
Fusion event
HIV-DIP2A-IT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
47888940/46469027 (Hg38)
End
47888940/46469027 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
DIP2A-IT1
Nearest miRNA
hsa-let-7c/Upstream/990701;
Nearest TSS
ENST00000624081/Upstream/9916; ENST00000473752/Downstream/35286;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/9364, chr21-CpG: 19/Downstream/29557
Upstream sequence
Tacttgtttaattcctgtctttctttcaccgcttaagtttaaacttcactttctgttggaggctctgccttctactaaagcccccttctccccaaccttc
Downstream sequence
acagaataaagtgcctgtgctctgtatccttttaaaactcattgtatcactcttgtaggatcataattatttgtttcatgattatttgtttgcttgtctt
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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