Basic Information
VIS ID
TVIS30000820
Fusion event
HIV-NDUFA6-DT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr22
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
42505259/42109255 (Hg38)
End
42505259/42109255 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA22A
Target gene
NDUFA6-DT
Nearest miRNA
hsa-mir-1281/Upstream/185958; hsa-let-7a-3/Downstream/3091699;
Nearest TSS
ENST00000624155/Upstream/18300; ENST00000626627/Downstream/20654;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/18013, chr22-CpG: 95/Downstream/19474
Upstream sequence
ccgaatctatagaactaacttggttaaatggttctttaaggtctgattcatcctttctactctccctgatgaaggtgggtgccaaggagtatgatatttc
Downstream sequence
catctaatgtctagcgcttaggatagctttttaatgatatgtgctatgaaataggtttcactgtctgagtcaatattttctattagcccaaacctgggca
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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