Basic Information
VIS ID
TVIS30000826
Fusion event
HIV-TMEM164 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
GRCh37/hg19
Start
109312096/110068868 (Hg38)
End
109312096/110068868 (Hg38)
Orient
+
Location type
Intronic
Target gene
TMEM164
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-98-5p ; hsa-mir-190a-3p ; hsa-mir-4725-5p ; hsa-mir-5011-5p ; hsa-mir-1278 ; hsa-mir-1183 ; hsa-mir-4668-5p ; hsa-mir-3148 ; hsa-mir-766-5p ; hsa-mir-4738-5p ; hsa-mir-383-3p ; hsa-mir-5586-5p ; hsa-mir-4668-3p
Nearest miRNA
hsa-let-7f-2/Upstream/13442; hsa-mir-105-1/Downstream/13250;
Nearest TSS
ENST00000429181/Upstream/3767; ENST00000464177/Downstream/75987;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/65423, chrX-CpG: 83/Downstream/248607
Upstream sequence
CCCTTTGTATTACCAAAACAGTATGTATCTTTTCACATTTTACTCCATGtgcatagatatacacatgcatacacacatacacacacaAGTTTTGGAatgt
Downstream sequence
tttgttgttgttcattgtttgttttacagaaatagaatattatatatactttaatatatctttttcattctacaatatctcatagaaatctatcacagtc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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