Basic Information
VIS ID
TVIS30000829
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
80245485/79779800 (Hg38)
End
80245485/79779800 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/2719598; hsa-mir-11399/Downstream/5353994;
Nearest TSS
ENST00000473358/Upstream/454792; ENST00000567886/Downstream/271604;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/772948, chr1-CpG: 24/Downstream/551172
Upstream sequence
aaggtggaaggatcttgcagcccagcagtttaagaccagcctagacaacatagtaagaccccacctctaaaaaatagaaaaaaaattagccgggtgtggt
Downstream sequence
gacatgtgcctgtggtcccagcgacttgggaagctgaggtgggagtatcacttgtgcctgggaagtcaagactgcagtgagttatgattgcaccactgga
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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