Basic Information
VIS ID
TVIS30000830
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
106406504/105863882 (Hg38)
End
106406504/105863882 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/5582574; hsa-mir-11399/Downstream/2033341;
Nearest TSS
ENST00000473358/Upstream/244924; ENST00000635102/Downstream/89012;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2337591, chr1-CpG: 37/Downstream/216889
Nearby gene
PRMT6(+1192763) ;
Upstream sequence
CTGGGCAGGTATTTTAACCATGAGTTatatagtttggctctgtgtccccacccaactctcttctcaaattataagccctatgtgttgagcgaggaacctg
Downstream sequence
taatcctcatctgtagagagtagaggaagggaggtgaccagatcatcggggcggttccctccatgcttttcttgtgataactagtgagtgctcaaagtat
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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