Basic Information
VIS ID
TVIS30000831
Fusion event
HIV-MYBPHL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
109837441/109294819 (Hg38)
End
109837441/109294819 (Hg38)
Orient
-
Location type
Intronic
Target gene
MYBPHL
Nearest miRNA
hsa-mir-101-1/Upstream/1397515; hsa-mir-11399/Downstream/304074;
Nearest TSS
ENST00000473358/Upstream/11633; ENST00000475497/Downstream/1534;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/11234, chr1-CpG: 108/Downstream/102633
Upstream sequence
TTCCTAGGCTGAGTCAGAAGATTgcacagcataaagaaaaatgagctgagcgaggacccggagacctgggctatttccaccagtgccaggtgatcaacta
Downstream sequence
actgacactgggaatcttgggcaaaccagttccctccctgtactttcgtcttctcatttgcaaaatggaaataagaattcttcctatattattgaattgt
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate