VISDB Viral Integration Site DataBase

VIS ID

TVIS30000836

Fusion event

HIV-FOXN2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr2

Cytoband

p16.3

Reference genome

Start

End

48556042/48328903 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-218-5p ; hsa-mir-32-5p ; hsa-mir-188-5p ; hsa-mir-183-5p ; hsa-mir-100-5p ; hsa-mir-25-3p ; hsa-mir-29a-5p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-548j-3p ; hsa-mir-1277-5p ; hsa-mir-548x-3p ; hsa-mir-3613-3p ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-5582-3p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-2113 ; hsa-mir-548j-5p ; hsa-mir-548k ; hsa-mir-548l ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-4724-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548av-5p ; hsa-mir-548ay-5p ; hsa-mir-8054 ; hsa-mir-548bb-5p ; hsa-mir-4495 ; hsa-mir-4662a-3p ; hsa-mir-7109-3p ; hsa-mir-3148 ; hsa-mir-6124 ; hsa-mir-5692a ; hsa-mir-548n ; hsa-mir-4427 ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-6083 ; hsa-mir-651-5p ; hsa-mir-3978 ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-5579-3p ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-4328 ; hsa-mir-570-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-4781-3p ; hsa-mir-3074-3p ; hsa-mir-590-5p ; hsa-mir-21-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-3191-5p ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-146a-3p ; hsa-mir-5688 ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-497-3p ; hsa-mir-3133 ; hsa-mir-496

Nearest miRNA

hsa-mir-1301/Upstream/951133; hsa-mir-10b/Downstream/730700;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/13455, chr2-CpG: 60/Downstream/111517

Upstream sequence

ATAGCAATCCTTAAGTTTAAGTAGATGGGTTTTCTAAGTCAGATTTACTCTAAGAGCTGTAGTGGTTCTTTTCTATTGTATTTAGTAACATGTAGGGTAT

Downstream sequence

GTAAGTGTTATGTTTGAGATAATAGAACTTTATAAATTATTTAGTCACCAGTTTTTTTTTAACCTTTGTTCAAAATAGCCATTTTTCTTAAAACAGTTTT