Basic Information
VIS ID
TVIS30000837
Fusion event
HIV-STK39 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr2
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
168977183/168120673 (Hg38)
End
168977183/168120673 (Hg38)
Orient
+
Location type
Intronic
Target gene
STK39
Nearest miRNA
hsa-mir-128-1/Upstream/7712791; hsa-mir-10b/Downstream/462270;
Nearest TSS
ENST00000437798/Upstream/7567; ENST00000392687/Downstream/127468;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/404349, chr2-CpG: 128/Downstream/125767
Upstream sequence
GCAGCAGGGGTGCCCACAGCTGTGGCAGCAATCATAAATGTTACAAAAACAATCTGGACTATAATAACTATAGTAATAAAAGCAATATATGTGATTATTA
Downstream sequence
AAAAATTTTGCTATAACCTGTGCcacttattattttgtcccaaccactattatattatgtattacctaatttagtcctcccaaacatagctattattacc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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