Basic Information
VIS ID
TVIS30000843
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
164896119/165178331 (Hg38)
End
164896119/165178331 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1006775; hsa-mir-1224/Downstream/3373523;
Nearest TSS
ENST00000440867/Upstream/20269; ENST00000494915/Downstream/17671;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1173824, chr3-CpG: 23/Downstream/2201808
Nearby gene
SLITRK3(-8389) ;
Upstream sequence
AATCCTTTGTTGATAATCTAATTACTCCTCACCTTTGTCCACAACAGAGTTAGAACTGAAAGGGATATAACTACACAAATCCTGACACTCCAAGTGTTAA
Downstream sequence
TTATTATACATTTGTCTTGTATAGAACAGACAAAAATGTATTTAAACAGCTCTTCTTTTTAAAGGAAGGCAATATGTATAATACTTTTATATATGCCCTG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate