Basic Information
VIS ID
TVIS30000848
Fusion event
HIV-CTNND2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
11065433/11065321 (Hg38)
End
11065433/11065321 (Hg38)
Orient
-
Location type
Intronic
Target gene
CTNND2
Nearest miRNA
hsa-mir-10397/Upstream/587176; hsa-mir-103a-1/Downstream/3760608;
Nearest TSS
ENST00000502646/Upstream/47261; ENST00000505877/Downstream/52171;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/303508, chr5-CpG: 115/Downstream/319248
Nearest cancer related gene
CTNND2(OG, No orient, 0)
Upstream sequence
GGGTGCCTAATAACTGTGGATGCAGCCATGATTATAAGTATGAGGTCACTCACCTACTTAAGATAGTTCTTTTGGAAACTGTACTTAGTTATGCAATGCT
Downstream sequence
CAGTATTGTTTGTTGCTCACAGAACTTTACTGCTTGATCCAGTAGCACAGTCACACATATGTGTATACTTTAAATATTTATCCCCAGGAGCCCTGATACT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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