Basic Information
VIS ID
TVIS30000850
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
136103931/135782793 (Hg38)
End
136103931/135782793 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/543537; hsa-mir-1202/Downstream/2652420;
Nearest TSS
ENST00000381078/Upstream/110479; ENST00000446774/Downstream/25673;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/284771, chr6-CpG: 51/Downstream/467189
Nearby gene
PDE7B(+68903) ;
Upstream sequence
ggcattatgtagaggccaaatctatgactcactggtgtccctgaaagagatggggagaagagaatcaaattggaaaacacatttcaagatttcagtcatg
Downstream sequence
agaacttccccaatctagctaaagaggccaacattcaaattcaggaaatgcggagaaccccagtaagttacttcacaagaaaatcttcataattatcaga
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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