Basic Information
VIS ID
TVIS30000852
Fusion event
HIV-CCM2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr7
Cytoband
p13
Reference genome
GRCh37/hg19
Start
45084508/45044909 (Hg38)
End
45084508/45044909 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7D
Target gene
CCM2
Nearest miRNA
hsa-mir-1183/Upstream/163109; hsa-mir-10399/Downstream/11910876;
Nearest TSS
ENST00000635602/Upstream/6648; ENST00000480382/Downstream/19694;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/44251, chr7-CpG: 66/Downstream/43471
Upstream sequence
TGATTCTTATTTTCCTTCCTTCCTTCCTTAGACCTCTTAAGTATACCCTATAATATGATTTTTAATTCAAAAGTTATTAAAATTTTGTTTTGAAGATTTC
Downstream sequence
ATAACTAAACTCTAACCGATCCCCAAGATGACTAGAAAAGCCTCTTGGTTTTACAAAACTAGTTTGGATAGTGCTGTTCTGAAGGTATAATAGAAATTGG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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