Basic Information
VIS ID
TVIS30000853
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
56494994/55582435 (Hg38)
End
56494994/55582435 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/12686160; hsa-mir-10400/Downstream/6132353;
Nearest TSS
ENST00000518652/Upstream/56249; ENST00000519494/Downstream/163612;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/132827, chr8-CpG: 77/Downstream/190498
Nearby gene
XKR4(+56284) ;
Upstream sequence
TTGTTGAAAATTCAGTGGGCATGGGAAAGAAATGCAGCCAATGGCAGCCATTGTAAAGAAGCGGGTATTAAACATCTCTGCCAGAGCACACTAATGGAAT
Downstream sequence
TAGAAGCAATTTCAAGAAGATGAAGCACTTGTCTTGCCTACAAAGATACCTTGGAAAAATAAATGCCTGGGCTGCCTTCTCCAGCCTTCATGCAAGTGAG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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