Basic Information
VIS ID
TVIS30000854
Fusion event
HIV-LOC105375630 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
89377015/88364786 (Hg38)
End
89377015/88364786 (Hg38)
Location type
Intronic
Target gene
LOC105375630
Nearest miRNA
hsa-mir-12123/Upstream/8123313; hsa-mir-10400/Downstream/2840699;
Nearest TSS
ENST00000518652/Upstream/36761; ENST00000518631/Downstream/177818;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/36534, chr8-CpG: 92/Downstream/1392521
Nearby gene
MMP16(-37298) ;
Upstream sequence
TCTCCTTTAATAAACACACACAGACATATTGTTTCTCCAACTCTATTACTCTCCCACAATTAACGTTGTCACTTCTCCAATTTTTTCAGTTTCATATATT
Downstream sequence
TTATTCCACACTGATATTTCTGAAAATTTGATCCTTCTACCTACCTAAatcaaatgacctaagatgtttttccaaaatataaattctgagctcacaccca
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate