Basic Information
VIS ID
TVIS30000855
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr8
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
104244670/103232442 (Hg38)
End
104244670/103232442 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA8A
Nearest miRNA
hsa-mir-12123/Upstream/77753; hsa-mir-10400/Downstream/1251927;
Nearest TSS
ENST00000518652/Upstream/3128; ENST00000523933/Downstream/53460;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/91280, chr8-CpG: 84/Downstream/66139
Nearby gene
BAALC(+2137) ;
Nearest cancer related gene
BAALC(OG, +2137) ;
Upstream sequence
aacttaagatggggataaatgctgaaaagaatgttaataggagaatgagctggacggaagcaggaagggagcaggagaccatttaggaggctacagctat
Downstream sequence
agtcctgggaagagatgtcagtgcaaggaatagggtaatggttgcaaagacggatgaaaataggtggatgctgagaacattttggaaatggaaacattgg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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