Basic Information
VIS ID
TVIS30000864
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr12
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
27186358/27033425 (Hg38)
End
27186358/27033425 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/1159346; hsa-let-7i/Downstream/15290275;
Nearest TSS
ENST00000382841/Upstream/3165; ENST00000620519/Downstream/3675;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/10515, chr12-CpG: 67/Downstream/210624
Nearby gene
MED21(+2752) ;
Upstream sequence
aagggaaactcttgggcctctttagaggtactaatcccactcatgaggcctttaccttcttgacctagtcatttttcaaaggctcgacccatcatcattc
Downstream sequence
gtatgttaggatttcaacgtacaaatttgtggggttgggagggatacaagcattcagagcatagcaCTATTTTAATAATCATTTCAAATAGAGTCATTCT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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