Basic Information
VIS ID
TVIS30000868
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
60137691/59845492 (Hg38)
End
60137691/59845492 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA15A
Nearest miRNA
hsa-mir-10393/Upstream/674230; hsa-mir-11181/Downstream/2459166;
Nearest TSS
ENST00000557528/Upstream/155958; ENST00000396057/Downstream/158730;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/155896, chr15-CpG: 17/Downstream/149751
Nearby gene
BNIP2(-156049) ;
Upstream sequence
GGTTTGGGGAATTGAGGTGATTGCCTTGGAACTCTTTTCATGGTCTAACTTGGAAATCAGAGATAACTAGGTCAGAGTCAGGAGCAATGACAGCTTTGGG
Downstream sequence
AAGAAAGGTTTGATACCTCTACAATCATGCTGCAGTTGCTTATGCAAGGGGATTTTCCCTACCCTCCCTCTCTGGTGGATGCAAACTCTGGAGAAAAGAG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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