Basic Information
VIS ID
TVIS30000870
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
11629331/11535475 (Hg38)
End
11629331/11535475 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/228948; hsa-mir-11401/Downstream/1184846;
Nearest TSS
ENST00000527434/Upstream/11887; ENST00000329565/Downstream/20969;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/41379, chr16-CpG: 118/Downstream/50677
Nearby gene
LITAF(-12247) ;
Nearest cancer related gene
LITAF(TSG, -12247) ;
Upstream sequence
GCACAAAAACACAAATGCCTCTGGGAGGATTGACATGTTAGCTGAGGAATCccagcttggaacctgggaccggtaacttcacctgtcagaatttcagttt
Downstream sequence
gtctgtaaaatggagaggggatgttcatcttacagaatcgttgtgaaattcaataacagaatgtgccccgcccatggcaggcactcaacagatactCACT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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