Basic Information
VIS ID
TVIS30000871
Fusion event
HIV-WWOX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
78579721/78545824 (Hg38)
End
78579721/78545824 (Hg38)
Orient
+
Location type
Intronic
Target gene
WWOX
Nearest miRNA
hsa-mir-1225/Upstream/1676805; hsa-mir-11401/Downstream/2839194;
Nearest TSS
ENST00000527434/Upstream/39256; ENST00000566103/Downstream/532410;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/445655, chr16-CpG: 44/Downstream/1043770
Nearest cancer related gene
WWOX(TSG, No orient, 0)
Upstream sequence
tcacagttctggaggctggaaattcaagacaaagttgctggcagggtctctctgaggcctctctccttggcttgcagacggccgccttcttgctctgtcc
Downstream sequence
tcacgtggccttccgtctgtttcttggtgcacatccctggtgtctcttcctcctcttataaggacaccagtcctcttggattagggcaccacgcttatga
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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