Basic Information
VIS ID
TVIS30000872
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
53245540/55168179 (Hg38)
End
53245540/55168179 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/4399449; hsa-mir-1250/Downstream/1723091;
Nearest TSS
ENST00000595228/Upstream/137372; ENST00000572234/Downstream/96833;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/199172, chr17-CpG: 65/Downstream/70078
Nearby gene
STXBP4(+4091) ;
Upstream sequence
AAAATAAGAAGTTGGCACCAAATTAAATGCATGGATTACTTCTCTGATAAAAGTACTCGATATAAGGGAAATTTGAAGGAAATAGAATGCATACATACAC
Downstream sequence
ACACATACACTTAgtatatgtgtgtgtgtgtgtgtgtatatatatatatctgtgtgtATATacacaccacacacacacacacacacacGTATTGGAGGAA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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