Basic Information
VIS ID
TVIS30000873
Fusion event
HIV-LINC00673 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
70568067/72571928 (Hg38)
End
70568067/72571928 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC00673
Nearest miRNA
hsa-mir-10226/Upstream/3472272; hsa-mir-1250/Downstream/2176685;
Nearest TSS
ENST00000595228/Upstream/101562; ENST00000584975/Downstream/20412;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/31381, chr17-CpG: 117/Downstream/19704
Upstream sequence
TGCACAGCAGCTGGATCAGCCACCCTGGAAACTTCCATCAGCCTCGGTTCCTTGGTCTTCTCAAGCCTCTTTTCGGGGCCCAGGTTCCCAGAATAGAGGC
Downstream sequence
AGCAAATCTCCCAGAGTCCTCCTCAAATGCCTCCCATTGCCCTGACCTCCCTAAACAAAGGTGCTTTTTTCCCCAGCTCCTCGGGGTCACCACATTTTCG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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