Basic Information
VIS ID
TVIS30000877
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
2265267/2265268 (Hg38)
End
2265267/2265268 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-1227/Upstream/14550; hsa-let-7e/Downstream/169646;
Nearest TSS
ENST00000633603/Upstream/8851; ENST00000592787/Downstream/4140;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/11308, chr19-CpG: 227/Downstream/3848
Nearby gene
OAZ1(+4253) ;
Upstream sequence
tcctcttggttcagcctcccaagtagctgggatcacagatgcccacccaatcccagctaattaaaatttttttaattttttaaaatttctagaagttttt
Downstream sequence
aaaattctcaacaaagtgagaacctagagatagggtcttgctatgttggccaggctggtctgcaactcctgggctcaagcgatcttcttgcttcagcctc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate