Basic Information
VIS ID
TVIS30000880
Fusion event
HIV-TSHZ3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
31652603/31161697 (Hg38)
End
31652603/31161697 (Hg38)
Location type
Intronic
Target gene
TSHZ3
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-21-5p ; hsa-mir-30b-5p ; hsa-mir-25-3p
Nearest miRNA
hsa-mir-10395/Upstream/10762343; hsa-let-7e/Downstream/3961003;
Nearest TSS
ENST00000633603/Upstream/61393; ENST00000589511/Downstream/5819;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/441720, chr19-CpG: 22/Downstream/117316
Nearby gene
TSHZ3(-113248) ;
Upstream sequence
GCATCTGCATTTCCTAATATCTGGAAACCCCTCTGGGTCACCCTTCCCCTCAGTAACTTTGGGCCACCTCCTGGGCCCTGATGTGCAGGATCCAATCAGG
Downstream sequence
CAGACGTGCAGTTTGCATTTTTAGAACCGGCCTATTCTGTTCCTTTGCCATGCTGTggcaagccctttctgtaaagggccagatagtaaatatttttggc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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