Basic Information
VIS ID
TVIS30000881
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
31985555/31494649 (Hg38)
End
31985555/31494649 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/11095295; hsa-let-7e/Downstream/3628051;
Nearest TSS
ENST00000633603/Upstream/28996; ENST00000593063/Downstream/47390;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/137346, chr19-CpG: 27/Downstream/729829
Nearby gene
THEG5(+93540) ;
Upstream sequence
tcactggctaggtatgcttttagttttataagaaaatgccaagacttttgccaaaatgaatgtactattttatcttcccaccaacaatataggaaggttc
Downstream sequence
tcaccggccccacatctttgcccatattaggtgttgttgaactgaatgtgaagcattctgccaggtgataaggggtgtcccattgcagttttaacacgca
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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