Basic Information
VIS ID
TVIS30000885
Fusion event
HIV-PPP5C integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
46884365/46381108 (Hg38)
End
46884365/46381108 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
PPP5C
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-99b-3p ; hsa-mir-615-3p
Nearest miRNA
hsa-mir-10395/Upstream/362059; hsa-let-7e/Downstream/328174;
Nearest TSS
ENST00000633603/Upstream/5481; ENST00000532058/Downstream/403;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/33687, chr19-CpG: 44/Downstream/30946
Upstream sequence
ttgatactattccttagatcttaatgacctgaatttttttaattcttttcacgatttttcctctatgtatttcagttcagataatttcagttgtccttat
Downstream sequence
gttcactgattctttgtaactgctgtcaagcccaacaaatgaattatttatttcttacattgtattttttattggtagcattttcatttagttgtgtttt
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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