Basic Information
VIS ID
TVIS30000886
Fusion event
HIV-chr2 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28086908
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.3
Reference genome
GRCh38/hg38
Start
48177527 (Hg38)
End
48177527 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1301/Upstream/799757; hsa-mir-10b/Downstream/882076;
Nearest TSS
ENST00000437798/Upstream/12593; ENST00000413569/Downstream/63456;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/270614, chr2-CpG: 103/Downstream/136850
Upstream sequence
attcctttttaattataaattccacatttaggtcattcttttgctattgtatctgatcacaagctgttaaaagcggtcatgccacttcttgaatgctttg
Downstream sequence
cagcttagaaattttttccaccagaggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcacctgaagtcagg
Reference
Symons, J., et al. HIV integration sites in latently infected cell lines: evidence of ongoing replication. Retrovirology,2017, 14(1): 2.
Curate