Basic Information
VIS ID
TVIS30000887
Fusion event
HIV-chrX integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28086908
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh38/hg38
Start
38811467 (Hg38)
End
38811467 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-23c/Upstream/787481; hsa-let-7f-2/Downstream/849749;
Nearest TSS
ENST00000429181/Upstream/7584; ENST00000447651/Downstream/488319;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/5956, chrX-CpG: 40/Downstream/350942
Nearby gene
MID1IP1-AS1(-4935) ;
Upstream sequence
AAAGCAGAAAACGGAGAGTTGTGCATCTGTCTAAAGAAATCCCCTAAAACCACGACTATCTTATCAATCCTTCCTGTTTTGGCATTCTGTACTTTAAAGA
Downstream sequence
GAAACATTTTTTTTTGTAACTTCCACTGCTTTTTGTTATATTTTATTACTTCTTTGTCTATTCTTCCAGAATGCTTTGCCTAGCAGTTTTCAAAACATAT
Reference
Symons, J., et al. HIV integration sites in latently infected cell lines: evidence of ongoing replication. Retrovirology,2017, 14(1): 2.
Curate