Basic Information
VIS ID
TVIS30000899
Fusion event
HIV-chr10 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28086908
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q11.1
Reference genome
GRCh38/hg38
Start
39936068 (Hg38)
End
39936068 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1265/Upstream/4294816; hsa-mir-107/Downstream/3061495;
Nearest TSS
ENST00000439456/Upstream/1482887; ENST00000442306/Downstream/2249271;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/992962, chr10-CpG: 184/Downstream/2174965
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATcattctcaacaactactttgtgatgtgtgcgttcaactcacagagtttaacctttcttttcataga
Downstream sequence
gcagtttggaaacactctgtttgtaaagcctgcaagtgcttttttggacttcattgaggccttcgttggaaacgggatttcttcatgtaatgctagacag
Reference
Symons, J., et al. HIV integration sites in latently infected cell lines: evidence of ongoing replication. Retrovirology,2017, 14(1): 2.
Curate