Basic Information
VIS ID
TVIS30000900
Fusion event
HIV-LOC105373153 integration
Validated
Yes
Detection method
QiaQuick PCR and Sequencing
Data source
Curated
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28086908
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh38/hg38
Start
34073326 (Hg38)
End
34073326 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373153
Nearest miRNA
hsa-mir-23c/Upstream/1431767; hsa-let-7f-2/Downstream/3950569;
Nearest TSS
ENST00000429181/Upstream/331208; ENST00000329357/Downstream/58985;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/346492, chrX-CpG: 25/Downstream/57297
Upstream sequence
attctgtggggttcaattttaatctgatggaatgcctttaaaggcatatatgtttggatagatttttttccttaatctggctctttaaattttatagcag
Downstream sequence
taacattggtttttcacaagatactttatcatagtcaggagcttaattccCATCAAGGCACTTCTGATTAATTTTTttggctaccactcccccaggaaac
Reference
Symons, J., et al. HIV integration sites in latently infected cell lines: evidence of ongoing replication. Retrovirology,2017, 14(1): 2.
Curate