VISDB Viral Integration Site DataBase

VIS ID

TVIS30000901

Fusion event

HIV-SLC25A12 integration

Validated

Yes

Detection method

QiaQuick PCR and Sequencing

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q31.1

Reference genome

Start

End

171821429 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-766-3p ; hsa-mir-30c-5p ; hsa-let-7f-5p ; hsa-mir-511-3p ; hsa-mir-493-5p ; hsa-mir-510-3p ; hsa-mir-5580-3p ; hsa-mir-9-3p ; hsa-mir-494-3p ; hsa-mir-4789-3p ; hsa-mir-100-3p ; hsa-mir-8087 ; hsa-mir-4432 ; hsa-mir-505-3p ; hsa-mir-499a-5p ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-320d ; hsa-mir-4429 ; hsa-mir-320c ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-4777-3p ; hsa-mir-545-3p ; hsa-mir-3613-3p ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-6779-3p ; hsa-mir-4687-5p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-548p ; hsa-mir-297 ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-6867-5p ; hsa-mir-3177-5p ; hsa-mir-567 ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-5011-5p ; hsa-mir-1277-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p

Nearest miRNA

hsa-mir-128-1/Upstream/3238411; hsa-mir-10b/Downstream/3346204;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/133249, chr2-CpG: 56/Downstream/100794

Upstream sequence

acatatctcttaacacacatgtgtaaacatttttgttagggactacacccaggagaggaaccaacaggtcacggggtatgtgtttcttcaactgcagtgg

Downstream sequence

tactgacaaatagttgccaaagttgtgatgctagcaatttccattccttcacctcttgaacaacacttgccattgtcagagtataattttgatcaatctg